2021 -2022 Virtual Workshop Series: Quantitative Methods for HIV Researchers
This NIAID-funded series of workshops is designed to provide HIV researchers with the quantitative skills necessary for analysis of the large, complex data sets resulting from assays such as single-cell RNA-seq, flow cytometry, fMRI, etc. Each part of the series consists of 6 once-a-week workshops, and is open to graduate students, postdocs, medical fellows, staff and faculty. Non-Duke-affiliated applicants are welcome.
The series consists of the following modules:
Part I: Data Science Workshops (Oct-Nov 2021)
Part II: Statistics Workshops (Jan – Feb 2022)
Part III: Assays Workshops (Mar - Apr 2022)
These FREE workshops are funded by NIAID and applicants are expected to attend ALL workshops. (For Part III, applicants may select one or more workshops of relevance to their research.) These workshops build on each other sequentially; hence, for Part II, priority will be given to those who have attended Part I, and for Part III, priority will be given to those who have attended Parts I and II. The requirement to attend prior workshop modules can be waived if you can demonstrate prior knowledge and competency in data science (for Parts II and III) and statistics (for Part III).
This year (’21 – ’22), the workshops will be taught virtually through Zoom.
2021 - 2022 Workshops
| Part I - Data Science | 10/15/2021 | Reproducible Analysis | Zoom |
| Part I - Data Science | 10/22/2021 | RStudio and Base R | no recording |
| Part I - Data Science | 10/29/2021 | Packages and Libraries/Intro to tidyverse | Zoom |
| Part I - Data Science | 11/5/2021 | Data Manipulation and Visualization with tidyverse | no recording |
| Part I - Data Science | 11/12/2021 | HIV examples | no recording |
| Part I - Data Science | 11/19/2021 | More examples or Bring Your Own Data | no recording |
| Part II - Statistics | 1/14/2022 | Breakdown of an Experiment | Zoom |
| Part II - Statistics | 1/21/2022 | Probability, Distributions, and Confidence Intervals | Zoom |
| Part II - Statistics | 1/28/2022 | Hypothesis Testing and Power/Sample Size | Zoom |
| Part II - Statistics | 2/4/2022 | Paired and Categorical Data Approaches | Zoom |
| Part II - Statistics | 2/11/2022 | Regression, Survival, and Longitudinal Models | Zoom |
| Part II - Statistics | 2/18/2022 | Bring Your Own Project / High-level Consulting | Zoom |
| Part III - Assays | 3/11/2022 | Introduction to High-throughput sequencing | Zoom |
| Part III - Assays | 3/18/2022 | Bioinformatics for RNA-seq | Zoom |
| Part III - Assays | 3/25/2022 | Statistical Analysis for RNA-seq | Zoom |
| Part III - Assays | 4/1/2022 | Microbiome analysis | Zoom |
| Part III - Assays | 4/8/2022 | Bioinformatics for ScRNA-seq | Zoom |
| Part III - Assays | 4/15/2022 | Bioinformatics for Flow cytometry | no recording |
2020 - 2021 Workshops
| Part I - Data Science | 10/15/2020 | Reproducible Analysis | |
| Part I - Data Science | 10/22/2020 | RStudio and Base R | |
| Part I - Data Science | 10/29/2020 | Packages and Libraries/Intro to tidyverse | |
| Part I - Data Science | 11/5/2020 | Data Manipulation and Visualization with tidyverse | |
| Part I - Data Science | 11/12/2020 | HIV examples | |
| Part I - Data Science | 11/19/2020 | More examples or Bring Your Own Data | |
| Part II - Statistics | 1/14/2021 | Breakdown of an Experiment | |
| Part II - Statistics | 1/21/2021 | Exploratory Data Analyses | |
| Part II - Statistics | 1/28/2021 | Hypothesis Testing | |
| Part II - Statistics | 2/4/2021 | Regression Models Part 1 | |
| Part II - Statistics | 2/11/2021 | Regression Models Part 2 | |
| Part II - Statistics | 2/18/2021 | Multilevel Models | |
| Part III - Assays | 3/18/2021 | Introduction to High-throughput Sequencing | Zoom |
| Part III - Assays | 3/25/2021 | Bioinformatics for RNA-seq | Zoom |
| Part III - Assays | 4/1/2021 | Statistical Analysis for RNA-seq | Zoom |
| Part III - Assays | 4/8/2021 | Bioinformatics for Flow Cytometry | Zoom |
| Part III - Assays | 4/15/2021 | Microbiome Analysis | Zoom |
| Part III - Assays | 4/22/2021 | Bioinformatics for ScRNA-seq | Zoom |
2019 - 2020 Workshops
| Part I - Data Science | 8/30/2019 | Intro to Rstudio, Basic R commands, objects |
| Part I - Data Science | 9/6/2019 | Dataframes, tidy data, tidyverse, ggplot2 |
| Part I - Data Science | 9/13/2019 | Exploratory Data Analyses (Visualization) |
| Part I - Data Science | 9/20/2019 | Models, formulas |
| Part I - Data Science | 9/27/2019 | Bioconductor objects |
| Part I - Data Science | 10/4/2019 | Bioconductor workflow example |
| Part II - Statistics | 10/11/2019 | Introduction and study design |
| Part II - Statistics | 10/18/2019 | Exploratory data analysis and visualization |
| Part II - Statistics | 10/25/2019 | Hypothesis testing and sample size estimation – Part 1 |
| Part II - Statistics | 11/1/2019 | Hypothesis testing and sample size estimation – Part 2 |
| Part II - Statistics | 11/8/2019 | Multivariable modeling |
| Part II - Statistics | 11/15/2019 | Multilevel and random effects models |
| Part III - Assays | 1/16/2020 | Intro to HTS/RNA-Seq |
| Part III - Assays | 1/31/2020 | Intro to Statistical Downstream Analysis of RNA-Seq Data |
| Part III - Assays | 2/13/2020 | Microbiome analysis |
| Part III - Assays | 2/21/2020 | Single-cell analysis |
| Part III - Assays | 3/6/2020 | Analysis of antibody assays (workshop cancelled) |
| Part III - Assays | 4/3/2020 | Analysis of neuro-imaging data (workshop cancelled) |