
HIV/AIDS research is generating increasingly large and complex data sets. To analyze these data sets, we need the next generation of HIV/AIDS researchers to learn skills in data processing and statistical analysis, as well as increase collaboration with quantitative scientists such as statisticians, mathematicians, computer scientists and engineers. The curriculum will train HIV/AIDS researchers in the data science and statistics skills required to analyze multi-parameter data through a series of hands-on workshops
2025 – 2026 Workshop Series: Quantitative Methods for HIV Researchers
Register HERE by Monday, September 22, 2025
Overview
The Quantitative Methods for HIV/AIDS workshop series is designed to provide HIV researchers with a hands-on introduction to quantitative analyses both through simple and large, complex data sets. These NIH-funded workshops are open to graduate students, postdocs, medical fellows, staff, and faculty working in the HIV/AIDS field. Non-Duke-affiliated applicants are welcome.
Details
Each part of the series consists of six, virtual, once-a-week workshops held on Mondays from 1 – 4 PM through Zoom.
- Part I workshops will teach reproducible research and R language skills along with an introduction to data analysis and study design. The seminars will be taught using RStudio. (Note: R knowledge is necessary for Part II- Statistics Workshops and Part III- Assay Analysis Workshops).
- There will be a Day 0: Introduction to R seminar for those with no prior experience in R. Participants with R experience may skip this session, but are welcome to attend.
- Part II workshops will build on the statistical concepts discussed in Part 1 and the utilization of predictive models using previously published HIV data. Attendees will learn important concepts in statistics and perform statistical analyses using real HIV data. We will introduce hypothesis testing, multiple testing correction, linear and logistic regression, and high dimensional modeling. The final day is scheduled as a design studio where participants can sign up to discuss their work and receive feedback from instructors and fellow workshop attendees
- Part III workshops will teach bioinformatics skills for analysis of high throughput sequencing datasets.
NOTE: The material presented in Part I is a pre-requisite for Part II and Part III. Participants fluent with R, RStudio, and Git may skip the Part I Workshops, but must understand that the material covered in Part I will not be reviewed in Part II and Part III. Part I seminars will be recorded for attendees unable to attend Part I but interested in Parts II/III. Priority registration will be given to those who attended the previous parts.
2025 – 2026 Workshops Schedule
Part I: Data Science Workshops
9/29/2025 Introduction to R (*not a required workshop)
10/6/2025 Intro to Data Driven Research, Part 1
10/20/2025 Intro to Data Driven Research, Part 2
10/27/2025 Exploratory analysis and visualization, Part 1
11/3/2025 Exploratory analysis and visualization, Part 2
11/10/2025 Exploratory analysis and visualization, Part 3
11/17/2025 Case Study Walk-through
Part II: Statistical Thinking Workshops
January - February 2026 TBD
Part III: Assays Workshops
March - April 2026 TBD
PART I: Data Science Workshops (must commit to attend all 6 sessions)
Monday, Oct 7 | Introduction to R (not required) | Overview of general usage of R | Link to Workshop Recording |
Monday, Oct 21 | Intro to Data Driven Research, Part 1 | Discussion of Reproducible Research | Link to Workshop Recording |
Monday, Oct 28 | Intro to Data Driven Research, Part 2 | The use of Tidyr and dplyr | Link to Workshop Recording |
Monday, Nov 4 | Exploratory analysis and visualization, Part 1 | Visualizations with Base R and ggplot2 graphics | Link to Workshop Recording |
Monday, Nov 11 | Exploratory analysis and visualization, Part 2 | The Scientific Process, common data types, calculating summary statistics and graphical summaries | Link to Workshop Recording |
Monday, Nov 18 | Exploratory analysis and visualization, Part 3 | Probability Distributions. Sampling and QQ plots. Confidence intervals | Link to Workshop Recording |
Monday, Nov 25 | Case Study Walk-through | Case Study Walk-through | Link to Workshop Recording |
PART II: Statistical Thinking Workshops
Date | Workshop Description | Workshop Recording |
---|---|---|
Monday, Jan 27, 2025 | Hypotheses, non-parametric tests, power, and error | Link |
Monday, Feb 3, 2025 | Linear regression, categorical predictors, interaction effect | Link |
Monday, Feb 10, 2025 | Logistic regression and classification | Link |
Monday, Feb 17, 2025 | Penalized regression, cross-validation, overfitting | Link |
Monday, Feb 24, 2025 | Random forest, principal component regression | Link |
Monday, March 3, 2025 | Data Workshop | Link |
PART III: Bioinformatics Workshops (must commit to attend all 6 sessions)
Date | Workshop Description | Location | Time |
---|---|---|---|
Monday, March 10, 2025 | Introduction to High-throughput sequencing | Watch on YouTube | 1pm - 4pm |
Monday, March 17, 2025 | Bioinformatics for RNA-seq | Watch on YouTube | 9am - Noon |
Monday, March 24, 2025 | Bioinformatics for scRNA-seq | Watch on YouTube | 1pm - 4pm |
Monday, March 31, 2025 | Statistical Analysis for RNA-seq | Zoom | 1pm - 4pm |
Monday, April 7, 2025 | scRNA-Seq: Overview of tools; Using Seurat for QC, Transformations, and Normalization | Zoom | 1pm - 4pm |
Monday, April 14, 2025 | scRNA-Seq: Dimension reduction, Clustering, Cluster Annotation, Visualization, and Pseudo-bulking | Zoom | 1pm - 4pm |